.TH mia\-3dlandmarks\-transform 1 "v2.4.7"  "USER COMMANDS"
.SH NAME
mia\-3dlandmarks\-transform
\- Transform 3D landmark positions.
.SH SYNOPSIS
.B  mia\-3dlandmarks\-transform \-i <in\-file> \-o <out\-file> \-t <transformation> [options]
.SH DESCRIPTION
.B mia\-3dlandmarks\-transform
Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).
.SH OPTIONS
.RS
.IP "\-i \-\-in-file=(input, required); io"
input landmark set
 For supported file types see PLUGINS:3dlandmarklist/io
.IP "\-o \-\-out-file=(output, required); io"
output landmark set
 For supported file types see PLUGINS:3dlandmarklist/io
.IP "\-t \-\-transformation=(input, required); io"
transformation file
 For supported file types see PLUGINS:3dtransform/io
.RE
.SS Help & Info
.RS
.IP "\-V \-\-verbose=warning"
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

.RS 10
.I
trace
\(hy Function call trace
.RE
.RS 10
.I
debug
\(hy Debug output
.RE
.RS 10
.I
info
\(hy Low level messages
.RE
.RS 10
.I
message
\(hy Normal messages
.RE
.RS 10
.I
warning
\(hy Warnings
.RE
.RS 10
.I
fail
\(hy Report test failures
.RE
.RS 10
.I
error
\(hy Report errors
.RE
.RS 10
.I
fatal
\(hy Report only fatal errors
.RE
.IP "   \-\-copyright"
print copyright information

.IP "\-h \-\-help"
print this help

.IP "\-? \-\-usage"
print a short help

.IP "   \-\-version"
print the version number and exit

.RE
.SS Processing
.RS
.IP "   \-\-threads=\-1"
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (\-1: automatic estimation).

.RE
.SH PLUGINS: 3dlandmarklist/io
.TP 10
.B datapool
Virtual IO to and from the internal data pool
.P
.RS 14
Recognized file extensions:  .@
.RE
 
.TP 10
.B lmx
IO plugin to load and store 3D landmark lists
.P
.RS 14
Recognized file extensions:  .lmx
.RE
 
.SH PLUGINS: 3dtransform/io
.TP 10
.B bbs
Binary (non-portable) serialized IO of 3D transformations
.P
.RS 14
Recognized file extensions:  .bbs
.RE
 
.TP 10
.B datapool
Virtual IO to and from the internal data pool
.P
.RS 14
Recognized file extensions:  .@
.RE
 
.TP 10
.B vista
Vista storage of 3D transformations
.P
.RS 14
Recognized file extensions:  .v, .v3dt
.RE
 
.TP 10
.B xml
XML serialized IO of 3D transformations
.P
.RS 14
Recognized file extensions:  .x3dt
.RE
 
.SH EXAMPLE
Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmx
.HP
mia\-3dlandmarks\-transform \-i input.lmx \-t trans.v  \-o output.lmx
.SH AUTHOR(s)
Gert Wollny
.SH COPYRIGHT
This software is Copyright (c) 1999\(hy2015 Leipzig, Germany and Madrid, Spain.
It comes  with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms of the GNU 
GENERAL PUBLIC LICENSE Version 3 (or later). For more 
information run the program with the option '\-\-copyright'.