.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTAQ-SEARCH_FOR_SEQ "1" "February 2017" "fastaq 3.15.0" "User Commands"
.SH NAME
fastaq_search_for_seq \- Find all exact matches to a string (and its reverse complement)
.SH DESCRIPTION
usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>
.PP
Searches for an exact match on a given string and its reverse complement, in
every sequence of input sequence file. Case insensitive. Guaranteed to find
all hits
.SS "positional arguments:"
.TP
infile
Name of input file
.TP
outfile
Name of outputfile. Tab\-delimited output: sequence name,
position, strand
.TP
search_string
String to search for in the sequences
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit