.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTAQ-DEINTERLEAVE "1" "February 2017" "fastaq 3.15.0" "User Commands"
.SH NAME
fastaq_deinterleave \- Splits interleaved paired file into two separate files
.SH DESCRIPTION
usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>
.PP
Deinterleaves sequence file, so that reads are written alternately between two
output files
.SS "positional arguments:"
.TP
infile
Name of fasta/q file to be deinterleaved
.TP
out_fwd
Name of output fasta/q file of forwards reads
.TP
out_rev
Name of output fasta/q file of reverse reads
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-fasta_out\fR
Use this to write output as fasta (default is same as input)