.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTAQ-CHUNKER "1" "February 2017" "fastaq 3.15.0" "User Commands"
.SH NAME
fastaq_chunker \- Splits sequences into equal sized chunks
.SH DESCRIPTION
usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>
.PP
Splits a multi sequence file into separate files. Splits sequences into chunks
of a fixed size. Aims for chunk_size chunks in each file, but allows a little
extra, so chunk can be up to (chunk_size + tolerance), to prevent tiny chunks
made from the ends of sequences
.SS "positional arguments:"
.TP
infile
Name of input file to be split
.TP
out
Prefix of output file. If \fB\-\-onefile\fR used, then name of single
output file
.TP
chunk_size
Size of each chunk
.TP
tolerance
Tolerance allowed in chunk size
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-onefile\fR
Output all the sequences in one file
.TP
\fB\-\-skip_all_Ns\fR
Do not output any sequence that consists of all Ns