.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTAQ-CAF_TO_FASTQ "1" "February 2017" "fastaq 3.15.0" "User Commands"
.SH NAME
fastaq_caf_to_fastq \- Converts a CAF file to FASTQ format
.SH DESCRIPTION
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
.PP
Converts CAF file to FASTQ format
.SS "positional arguments:"
.TP
infile
Name of input CAF file.
.TP
outfile
Name of output FASTQ file
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-c\fR, \fB\-\-clip\fR
Use clipping info to clip reads, if present in the
input CAF file (as lines of the form "Clipping QUAL
start end"). Default is to not clip
.TP
\fB\-l\fR INT, \fB\-\-min_length\fR INT
Minimum length of sequence to output [1]