.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTAQ-ADD_INDELS "1" "February 2017" "fastaq 3.15.0" "User Commands"
.SH NAME
fastaq_add_indels \- Deletes or inserts bases at given position(s)
.SH DESCRIPTION
usage: fastaq_add_indels [options] <infile> <outfile>
.PP
Deletes or inserts bases at given position(s)
.SS "positional arguments:"
.TP
infile
Name of input file
.TP
outfile
Name of output file
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-d\fR Name:start:bases, \fB\-\-delete\fR Name:start:bases
Delete the given bases from the given sequence. Format
same as samtools view: name:start\-end. This option can
be used multiple times (once for each region to
delete). Overlapping coords will be merged before
deleting
.TP
\fB\-\-delete_range\fR P,start,step
Deletes bases starting at position P in each sequence
of the input file. Deletes start + (n\-1)*step bases
from sequence n.
.TP
\fB\-i\fR Name:start:bases, \fB\-\-insert\fR Name:start:bases
Insert a random string of bases at the given position.
Format is name:position:number_to_add. Bases are added
after the position. This option can be used multiple
times
.TP
\fB\-\-insert_range\fR P,start,step
Inserts random bases starting after position P in each
sequence of the input file. Inserts start + (n\-1)*step
bases into sequence n.