NAME¶alignment-chop-internal - Remove ancestral sequences from an alignment.
SYNOPSIS¶alignment-chop-internal [OPTIONS] < alignments-file
DESCRIPTION¶Remove ancestral sequences from an alignment.
- -h, --help
- produce help message
- --align arg
- file with sequences and initial alignment
- --alphabet arg
- set to 'Codons' to prefer codon alphabets
- --tree arg
- file with tree that specifies leaves to keep
- -N arg, --nleaves arg
- number of sequences to keep
REPORTING BUGS:¶BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
Please send bug reports to <email@example.com>.