.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.5.
.TH DENOISEIMAGE "1" "October 2017" "DenoiseImage 2.2.0" "User Commands"
.SH NAME
DenoiseImage \- part of ANTS registration suite
.SH DESCRIPTION
.SS "COMMAND:"
.IP
DenoiseImage
.IP
Denoise an image using a spatially adaptive filter originally described in J. V.
Manjon, P. Coupe, Luis Marti\-Bonmati, D. L. Collins, and M. Robles. Adaptive
Non\-Local Means Denoising of MR Images With Spatially Varying Noise Levels,
Journal of Magnetic Resonance Imaging, 31:192\-203, June 2010.
.SS "OPTIONS:"
.HP
\fB\-d\fR, \fB\-\-image\-dimensionality\fR 2/3/4
.IP
This option forces the image to be treated as a specified\-dimensional image. If
not specified, the program tries to infer the dimensionality from the input
image.
.HP
\fB\-i\fR, \fB\-\-input\-image\fR inputImageFilename
.IP
A scalar image is expected as input for noise correction.
.HP
\fB\-n\fR, \fB\-\-noise\-model\fR Rician/(Gaussian)
.IP
Employ a Rician or Gaussian noise model.
.HP
\fB\-x\fR, \fB\-\-mask\-image\fR maskImageFilename
.IP
If a mask image is specified, denoising is only performed in the mask region.
.HP
\fB\-s\fR, \fB\-\-shrink\-factor\fR (1)/2/3/...
.IP
Running noise correction on large images can be time consuming. To lessen
computation time, the input image can be resampled. The shrink factor, specified
as a single integer, describes this resampling. Shrink factor = 1 is the
default.
.TP
\fB\-p\fR, \fB\-\-patch\-radius\fR 1
1x1x1
.IP
Patch radius. Default = 1x1x1
.TP
\fB\-r\fR, \fB\-\-search\-radius\fR 3
3x3x3
.IP
Search radius. Default = 3x3x3.
.HP
\fB\-o\fR, \fB\-\-output\fR correctedImage
.IP
[correctedImage,<noiseImage>]
.IP
The output consists of the noise corrected version of the input image.
Optionally, one can also output the estimated noise image.
.HP
\fB\-\-version\fR
.IP
Get Version Information.
.HP
\fB\-v\fR, \fB\-\-verbose\fR (0)/1
.IP
Verbose output.
.HP
\fB\-h\fR
.IP
Print the help menu (short version).
.HP
\fB\-\-help\fR
.IP
Print the help menu.
<VALUES>: 1