NAME¶

ANTSJacobian - part of ANTS registration suite

SYNOPSIS¶

ANTSJacobian ImageDim gWarp outfile uselog maskfn normbytotalbool projectionvector

DESCRIPTION¶

WARNING! ANTSJacobian may not be working correctly, see CreateJacobianDeterminantImage for an alternative method

for example ANTSJacobian 3 myWarp.nii Output 1 templatebrainmask.nii 1 1x0 the last 1 normalizes the jacobian by the total in the mask. use this to adjust for head size. 1x0 will project the warp along direction 1,0 --- don't add this option if you dont want to do this