.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.3.
.TH SURANKCO-TRAINING "1" "March 2016" "surankco-training 0.0.r5" "User Commands"
.SH NAME
surankco-training \- training of random forest using contig features and contig scores
.SH SYNOPSIS
.B surankco-training
[\fI\,options\/\fR]
.SH DESCRIPTION
Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).
.SH OPTIONS
.HP
\fB\-f\fR FEATURES, \fB\-\-features\fR=\fI\,FEATURES\/\fR
.IP
Indicate a list of surankco feature files (comma separated),
correct suffixes are mandatory ("*.features.txt")
.HP
\fB\-d\fR DIRECTORY, \fB\-\-directory\fR=\fI\,DIRECTORY\/\fR
.IP
Indicate a directory containing surankco feature files
("*.features.txt")
.HP
\fB\-o\fR OUTPUT.FILENAME, \fB\-\-output\fR.filename=OUTPUT.FILENAME
.IP
Indicate a name for the export of the random forest classifiers
(default = "surankco_rfs.RData")
.HP
\fB\-e\fR EXPONENTIAL.QUANTILE, \fB\-\-exponential\fR.quantile=EXPONENTIAL.QUANTILE
.IP
Indicate an exponential distribution quantile to divide scores
(default: 0.25)
.HP
\fB\-m\fR MANUAL.THRESHOLDS, \fB\-\-manual\fR.thresholds=MANUAL.THRESHOLDS
.IP
Indicate manual thresholds instead of quantiles, one per score
each (comma separated) in the same order as in the score file
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
Show this help message and exit
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.