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.TH SHOGUN 5 "August  1, 2007"
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.SH NAME
shogun \-  A Large Scale Machine Learning Toolbox
.SH SYNOPSIS
.B shogun
.RI [ options ]
.br
.SH DESCRIPTION
This manual page briefly documents the readline interface of
.B shogun
.
.PP
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\fBShogun\fP is a large scale machine learning toolbox with focus on large
scale kernel methods and especially on Support Vector Machines (SVM) with focus
to bioinformatics. It provides a generic SVM object interfacing to several
different SVM implementations. Each of the SVMs can be combined with a variety
of the many kernels implemented. It can deal with weighted linear combination
of a number of sub-kernels, each of which not necessarily working on the same
domain, where  an optimal sub-kernel weighting can be learned using Multiple
Kernel Learning.  Apart from SVM 2-class classification and regression
problems, a number of linear methods like Linear Discriminant Analysis (LDA),
Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms
to train hidden markov models are implemented. The input feature-objects
can be dense, sparse or strings and of type int/short/double/char and can
be converted into different feature types. Chains of preprocessors (e.g.
substracting the mean) can be attached to each feature object
allowing for on-the-fly pre-processing.

.SH OPTIONS
A summary of options is included below.
.TP
.B \-h, \-\-help, /?
Show summary of options.
.TP
.B \-i
listen on tcp port 7367 (hex of sg)
.TP
.B filename
execute a script by reading commands from file <filename>
.TP
when no options are given the interactive readline interface will be entered
.TP
.SH SEE ALSO
.BR svm-train (1),
.BR svm-predict (1).
.BR svm-scale (1).
.TP
.SH AUTHOR
.br
shogun was written by Soeren Sonnenburg <Soeren.Sonnenburg@first.fraunhofer.de>
and Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
.PP
This manual page was written by Soeren Sonnenburg <sonne@debian.org>,
for the Debian project (but may be used by others).