.TH RABEMA_PREPARE_SAM 1 "" "rabema_prepare_sam 1.2.10 [tarball]" "" .SH NAME rabema_prepare_sam \- Prepare SAM For Rabema .SH SYNOPSIS \fBrabema_prepare_sam\fP \fB-i\fP \fIIN.sam\fP \fB-o\fP \fIOUT.sam\fP .SH DESCRIPTION Prepare SAM file for usage with RABEMA. .SH OPTIONS .TP \fB-h\fP, \fB--help\fP Display the help message. .TP \fB--version\fP Display version information. .TP \fB-i\fP, \fB--in-file\fP \fIINPUT_FILE\fP Path to the input file. Valid filetype is: \fI.sam\fP. .TP \fB-o\fP, \fB--out-file\fP \fIOUTPUT_FILE\fP Path to the output file. Valid filetype is: \fI.sam\fP. .TP \fB--dont-check-sorting\fP Do not check sortedness.