.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.8.
.TH SALMON "1" "January 2019" "salmon 0.12.0" "User Commands"
.SH NAME
salmon \- highly-accurate, transcript-level quantification estimates from RNA-seq data
.SH SYNOPSIS
.B salmon
\fI\,-h|--help or\/\fR
.SH DESCRIPTION
salmon v0.12.0
.IP
salmon \fB\-v\fR|\-\-version or
salmon \fB\-c\fR|\-\-cite or
salmon [\-\-no\-version\-check] <COMMAND> [\-h | options]
.SS "Commands:"
.IP
index Create a salmon index
quant Quantify a sample
alevin single cell analysis
swim  Perform super\-secret operation
quantmerge Merge multiple quantifications into a single file