.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH EXTRACTBCITREES "1" "April 2015" "extractBCITrees 1.2.0+4713" "User Commands"
.SH NAME
extractBCITrees \- part of mauveAligner package reads all trees and their posterior from a set of MrBayes .trprobs files
.SH SYNOPSIS
.B extractBCITrees
\fI\,<random seed> <BCI threshold> <max output trees> <MrBayes .trprobs input file 1 \/\fR.. \fI\,N> <nexus output file>\/\fR
.SH DESCRIPTION
This program reads all trees and their posterior from a set of MrBayes .trprobs files
and sums and normalizes posteriors for each topology.  All trees that meet a Bayes Credible
Interval threshold will be saved, up to some maximum number of trees.
<BCI Threshold> A number between 0 and 1 giving the BCI threshold.  0.9 is a good choice.
<max output trees>      Limit the output to this many trees.
All trees in the input file must have the same number of taxa and the same taxon labels