.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH COORDINATETRANSLATE "1" "April 2015" "coordinateTranslate 1.2.0+4713" "User Commands"
.SH NAME
coordinateTranslate \- part of mauveAligner package
.SH SYNOPSIS
.B coordinateTranslate
\fI\,<XMFA alignment> <alignment coordinate file>\/\fR
.SH DESCRIPTION
Alignment coordinate file should be structured into 2 tab\-delimited columns: <block ID> <column>
Output will be the nearest aligned position for each genome in the block, with 0 entries for genomes undefined in the block