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PXSTREC(1) User Commands PXSTREC(1)

NAME

pxstrec - This will conduct state reconstruction analyses.

SYNOPSIS

pxstrec [OPTION]... [FILE]...

DESCRIPTION

This will conduct state reconstruction analyses.
-d, --dataf=FILE
input data file
-w, --datawide
data is in wide format so (001 instead of 2)
-z, --dataz
data is in probability format (0,1,0,0)
-t, --treef=FILE
input tree file
-c, --conf=FILE
configuration file
-o, --outanc=FILE
output file for ancestral calc

-n, --outstnum=FILE output file for stochastic mapping number

-a, --outstnumany=FILE output file for stochastic mapping number any

-m, --outsttim=FILE output file for stochastic mapping duration

-p, --periods=NUMS
comma separated times
-l, --logf=FILE
log file, stout otherwise
-h, --help
display this help and exit
-V, --version
display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
May 2018 pxstrec 0.99+ds