.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXRR "1" "May 2018" "pxrr 0.99+ds" "User Commands"
.SH NAME
pxrr \- This will reroot (or unroot) a tree file and produce a newick.
.SH SYNOPSIS
.B pxrr
[\fI\,OPTION\/\fR]... [\fI\,FILE\/\fR]...
.SH DESCRIPTION
This will reroot (or unroot) a tree file and produce a newick.
Can read from stdin or file.
.TP
\fB\-t\fR, \fB\-\-treef\fR=\fI\,FILE\/\fR
input tree file, stdin otherwise
.TP
\fB\-g\fR, \fB\-\-outgroups\fR=\fI\,CSL\/\fR
outgroup sep by commas (NO SPACES!)
.TP
\fB\-u\fR, \fB\-\-unroot\fR
unroot the tree
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output tree file, stout otherwise
.TP
\fB\-s\fR, \fB\-\-silent\fR
do not error if outgroup(s) not found
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.