.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXRLS "1" "May 2018" "pxrls 0.99+ds" "User Commands"
.SH NAME
pxrls \- Taxon relabelling for alignments.
.SH SYNOPSIS
.B pxrls
[\fI\,OPTION\/\fR]...
.SH DESCRIPTION
Taxon relabelling for alignments.
This will take fasta, phylip or nexus file formats
Two ordered lists of taxa, \fB\-c\fR (current) and \fB\-n\fR (new) must be provided.
.TP
\fB\-s\fR, \fB\-\-seqf\fR=\fI\,FILE\/\fR
input seq file, stdin otherwise
.TP
\fB\-c\fR, \fB\-\-cnames\fR=\fI\,FILE\/\fR
file containing current taxon labels (one per line)
.TP
\fB\-n\fR, \fB\-\-nnames\fR=\fI\,FILE\/\fR
file containing new taxon labels (one per line)
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output file, stout otherwise
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.