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PXNW(1) |
User Commands |
PXNW(1) |
NAME¶
pxnw - Conduct Needleman-Wunsch analysis for all the seqs in a file.
SYNOPSIS¶
pxnw [OPTION]... [FILE]...
DESCRIPTION¶
Conduct Needleman-Wunsch analysis for all the seqs in a file. This will take
fasta, fastq, phylip, and nexus inputs. Output is a list of the scores and
distances (and the alignments if asked). Can read from stdin or file.
- -s, --seqf=FILE
- input sequence file, stdin otherwise
- -o, --outf=FILE
- output score/distance file, stout otherwise
- -a, --outalnf=FILE
- output sequence file, won't output otherwise
- -t, --seqtype=INT
- sequence type, default=DNA (DNA=0,AA=1)
- -m, --matrix=FILE
- scoring matrix, default DNA=EDNAFULL, AA=BLOSUM62
- -n, --nthreads=INT
- number of threads (open mp), default=2
- -v, --verbose
- make the output more verbose, turns off parallel
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.