Scroll to navigation
| PXLSSQ(1) |
User Commands |
PXLSSQ(1) |
NAME¶
pxlssq - Print sequence file summary
SYNOPSIS¶
pxlssq [OPTION]...
DESCRIPTION¶
Print sequence file summary By default returns all properties. Alternatively
choose 1 property. This will take fasta, phylip or nexus file formats
- -s, --seqf=FILE
- input seq file, stdin otherwise
- -i, --indiv
- output stats for individual sequences
- -n, --nseq
- return the number of sequences
- -c, --nchar
- return the number of characters (only if aligned) - for unaligned seqs,
use with -i flag
- -l, --labels
- return all taxon labels (one per line)
- -p, --prot
- force interpret as protein (if inference fails)
- -a, --aligned
- return whether sequences are aligned (same length)
- -f, --freqs
- return character state frequencies
- -o, --outf=FILE
- output stats file, stout otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.
