.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXLSSQ "1" "May 2018" "pxlssq 0.99+ds" "User Commands"
.SH NAME
pxlssq \- Print sequence file summary
.SH SYNOPSIS
.B pxlssq
[\fI\,OPTION\/\fR]...
.SH DESCRIPTION
Print sequence file summary
By default returns all properties. Alternatively choose 1 property.
This will take fasta, phylip or nexus file formats
.TP
\fB\-s\fR, \fB\-\-seqf\fR=\fI\,FILE\/\fR
input seq file, stdin otherwise
.TP
\fB\-i\fR, \fB\-\-indiv\fR
output stats for individual sequences
.TP
\fB\-n\fR, \fB\-\-nseq\fR
return the number of sequences
.TP
\fB\-c\fR, \fB\-\-nchar\fR
return the number of characters (only if aligned)
\- for unaligned seqs, use with \fB\-i\fR flag
.TP
\fB\-l\fR, \fB\-\-labels\fR
return all taxon labels (one per line)
.TP
\fB\-p\fR, \fB\-\-prot\fR
force interpret as protein (if inference fails)
.TP
\fB\-a\fR, \fB\-\-aligned\fR
return whether sequences are aligned (same length)
.TP
\fB\-f\fR, \fB\-\-freqs\fR
return character state frequencies
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output stats file, stout otherwise
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.