.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXLOG "1" "May 2018" "pxlog 0.99+ds" "User Commands"
.SH NAME
pxlog \- MCMC log file manipulator.
.SH SYNOPSIS
.B pxlog
[\fI\,OPTION\/\fR]...
.SH DESCRIPTION
MCMC log file manipulator.
Can combine and resample parameters or trees across files.
Log files need not contain the same number of samples.
Input files may be indicated using wildcards e.g. '*.trees'
Parameter log files are expected to be whitespace delimited.
*NOTE* All values are in terms of number of SAMPLES (NOT generations).
.TP
\fB\-p\fR, \fB\-\-parmf\fR=\fI\,FILE\/\fR
input parameter log file(s)
.TP
\fB\-t\fR, \fB\-\-treef\fR=\fI\,FILE\/\fR
input tree log file(s)
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output file, stout otherwise
.TP
\fB\-b\fR, \fB\-\-burnin\fR=\fI\,INT\/\fR
number of samples to exclude at the beginning of a file
.TP
\fB\-n\fR, \fB\-\-thin\fR=\fI\,INT\/\fR
interval of resampling
.TP
\fB\-r\fR, \fB\-\-rand\fR=\fI\,INT\/\fR
number of random samples (without replacement) not yet implemented!
.TP
\fB\-i\fR, \fB\-\-info\fR
calculate log file attributes and exit
.TP
\fB\-x\fR, \fB\-\-seed\fR=\fI\,INT\/\fR
random number seed, clock otherwise
.TP
\fB\-v\fR, \fB\-\-verbose\fR
make the output more verbose
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.