.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXCONTRATES "1" "May 2018" "pxcontrates 0.99+ds" "User Commands"
.SH NAME
pxcontrates \- Continuous character rate estimation with Brownian and OU.
.SH SYNOPSIS
.B pxcontrates
[\fI\,OPTION\/\fR]...
.SH DESCRIPTION
Continuous character rate estimation with Brownian and OU.
This will take fasta, phylip (and soon nexus) inputs.
Can read from stdin or file.
.TP
\fB\-c\fR, \fB\-\-charf\fR=\fI\,FILE\/\fR
input character file, stdin otherwise
.TP
\fB\-t\fR, \fB\-\-treef\fR=\fI\,FILE\/\fR
input tree file, stdin otherwise
.TP
\fB\-a\fR, \fB\-\-analysis\fR=\fI\,NUM\/\fR
analysis type (0=anc[DEFAULT], 1=ratetest)
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output sequence file, stout otherwise
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.