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PXCLSQ(1) |
User Commands |
PXCLSQ(1) |
NAME¶
pxclsq - Cleans alignments by removing positions with too much ambiguous data.
SYNOPSIS¶
pxclsq [OPTION]...
DESCRIPTION¶
Cleans alignments by removing positions with too much ambiguous data. This will
take fasta, fastq, phylip, and nexus inputs. Results are written in fasta
format.
- -s, --seqf=FILE
- input sequence file, stdin otherwise
- -o, --outf=FILE
- output fasta file, stout otherwise
- -p, --prop=DOUBLE
- proportion required to be present, default=0.5
- -a, --aminoacid
- force interpret as protein (if inference fails)
- -v, --verbose
- more verbose output (i.e. if entire seqs are removed)
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.