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- buster 0.999+ds-1
PXCAT(1) | User Commands | PXCAT(1) |
NAME¶
pxcat - Sequence file concatenation.SYNOPSIS¶
pxcat [OPTION]...DESCRIPTION¶
Sequence file concatenation. Can use wildcards e.g.:- pxcat -s *.phy -o my_cat_file.fa
However, if the argument list is too long (shell limit), put filenames in a file:¶
- for x in *.phy; do echo $x >> flist.txt; done
and call using the -f option:¶
- pxcat -f flist.txt -o my_cat_file.fa
This will take fasta, fastq, phylip, and nexus inputs. Individual files can be of different formats.
- -s, --seqf=FILE
- list of input sequence files (space delimited)
- -f, --flistFILE
- file listing input files (one per line)
- -o, --outf=FILE
- output sequence file, stout otherwise
- -p, --partf=FILE
- output partition file, none otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
REPORTING BUGS¶
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.May 2018 | pxcat 0.99+ds |