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.IX Title "TFBS::PatternGen::Gibbs::Motif 3pm"
.TH TFBS::PatternGen::Gibbs::Motif 3pm "2018-11-02" "perl v5.28.0" "User Contributed Perl Documentation"
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.SH "NAME"
TFBS::PatternGen::Gibbs::Motif \- class for unprocessed motifs and associated 
numerical scores created by the Gibbs program
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed 
motifs and associated numerical scores created by the Gibbs program. You do not 
normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They are created
by running TFBS::PatternGen::Gibbs
.SH "FEEDBACK"
.IX Header "FEEDBACK"
Please send bug reports and other comments to the author.
.SH "AUTHOR \- Boris Lenhard and Wynand Alkema"
.IX Header "AUTHOR - Boris Lenhard and Wynand Alkema"
Boris Lenhard <Boris.Lenhard@cgb.ki.se>
Wynand Alkema <Wynand.Alkema@cgb.ki.se>
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object
methods. Internal methods are preceded with an underscore.
.SS "\s-1MAP\s0"
.IX Subsection "MAP"
.Vb 7
\& Title   : MAP
\& Usage   : my $map_score = $motif\->MAP;
\& Function: returns MAP score for the detected motif
\&           (This is a backward compatibility method. For consistency,
\&            you should use $motif\->tag(\*(AqMAP_score\*(Aq) instead
\& Returns : float (a scalar)
\& Args    : none
.Ve
.SS "Other methods"
.IX Subsection "Other methods"
TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif,
which inherits from TFBS::Matrix. Please consult the documentation of those modules
for additional available methods.