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.\" ========================================================================
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.IX Title "MAGE::Tools::MGEDOntologyClassEntry 3pm"
.TH MAGE::Tools::MGEDOntologyClassEntry 3pm "2018-11-01" "perl v5.26.2" "User Contributed Perl Documentation"
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.SH "Bio::MAGE::Tools::MGEDOntologyClassEntry"
.IX Header "Bio::MAGE::Tools::MGEDOntologyClassEntry"
.SS "\s-1SYNOPSIS\s0"
.IX Subsection "SYNOPSIS"
.Vb 3
\&  use Bio::MAGE::Tools::MGEDOntologyClassEntry;
\&  use Bio::MAGE::Tools::MGEDOntologyHelper;
\&  use Bio::MAGE::QuantitationType::MeasuredSignal;
\&
\&  my $mo_helper = Bio::MAGE::Tools::MGEDOntologyHelper\->new(
\&                        sourceFile => \*(AqMGEDOntology.owl\*(Aq,
\&                  );
\&
\&  my $qt = Bio::MAGE::QuantitationType::MeasuredSignal\->new(
\&             identifier => \*(AqQT1\*(Aq,
\&             isBackground => \*(Aqfalse\*(Aq,
\&           );
\&
\&  my $ont_entry = Bio::MAGE::Tools::MGEDOntologyClassEntry\->new(
\&                    parentObject => $qt,
\&                    className => \*(AqQuantitationType\*(Aq,
\&                    association => \*(AqDataType\*(Aq,
\&                    values => {
\&                            DataType => \*(Aqfloat\*(Aq,
\&                            },
\&                    ontology => $mo_helper,
\&                  );
.Ve
.SS "\s-1DESCRIPTION\s0"
.IX Subsection "DESCRIPTION"
This provides functionaliy for an ontology-aware OntologyEntry class
for entries of type Class.
.PP
Bio::MAGE::Tools::MGEDOntologyClassEntry is a concrete class.
.PP
Superclass is: Bio::MAGE::Tools::MGEDOntologyEntry
.PP
Subclasses are: none
.SS "\s-1ATTRIBUTES\s0"
.IX Subsection "ATTRIBUTES"
Attributes are simple data types that belong to a single instance of a
class. In the Perl implementation of the MAGE-OM classes, the
interface to attributes is implemented using separate setter and
getter methods for each attribute.
.IP "mgedOntologyClass" 4
.IX Item "mgedOntologyClass"
Stores the name of the equivalent class or property in the \s-1MGED\s0
Ontology for this OntologyEntry
.IP "isInstantiable" 4
.IX Item "isInstantiable"
Stores true if the class is an instantiable one.
.IP "isInstantiable" 4
.IX Item "isInstantiable"
Contains a hash reference to a list of \s-1OM\s0 clases that are circular
references which should only be followed one level.
.SH "BUGS"
.IX Header "BUGS"
Please send bug reports to the project mailing list: (mged-mage 'at' lists 'dot' sf 'dot' net)
.SH "AUTHOR"
.IX Header "AUTHOR"
Eric W. Deutsch (edeutsch 'at' systemsbiology 'dot' org)
followup work by Jason E. Stewart (jasons 'at' cpan 'dot' org)
.SH "SEE ALSO"
.IX Header "SEE ALSO"
\&\fIperl\fR\|(1).
.SH "POD ERRORS"
.IX Header "POD ERRORS"
Hey! \fBThe above document had some coding errors, which are explained below:\fR
.IP "Around line 655:" 4
.IX Item "Around line 655:"
You forgot a '=back' before '=head1'