.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.8.
.TH MAF-SWAP "1" "January 2019" "maf-swap 963" "User Commands"
.SH NAME
maf-swap \- changes the order of the sequences in MAF-format alignments
.SH SYNOPSIS
.B maf-swap
[\fI\,options\/\fR] \fI\,my-alignments.maf\/\fR
.SH DESCRIPTION
Change the order of sequences in MAF\-format alignments.
.SH OPTIONS
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-n\fR N
move the Nth sequence to the top (default: 2)