.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH HILIVE-BUILD "1" "July 2016" "hilive-build 0.0+20150926" "User Commands"
.SH NAME
hilive-build \- Index creation tool for HiLive - Realtime Alignment of Illumina Reads
.SH SYNOPSIS
.B hilive-build
[\fI\,options\/\fR] \fI\,INPUT\/\fR
.SH DESCRIPTION
HiLive index builder v0.1
Index creation tool for HiLive \- Realtime Alignment of Illumina Reads
Copyright \(co 2015, Martin S. Lindner
HiLive is open\-source software. Check with \fB\-\-license\fR for details.
.PP
Fixed k\-mer size: 15
.TP
INPUT
Reference genomes in (multi\-) FASTA format
.SS "General:"
.TP
\fB\-h\fR [ \fB\-\-help\fR ]
Print this help message and exit
.TP
\fB\-\-license\fR
Print licensing information and exit
.SH OPTIONS
.TP
\fB\-o\fR [ \fB\-\-outfile\fR ] arg
Set output file name [Default: INPUT.kix]
.TP
\fB\-t\fR [ \fB\-\-trim\fR ] arg
Ignore k\-mers with more than t occurrences. [Default:
no limit]
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.