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.TH "GMX-MK_ANGNDX" "1" "Feb 15, 2019" "2019.1" "GROMACS"
.SH NAME
gmx-mk_angndx \- Generate index files for 'gmx angle'
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.SH SYNOPSIS
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gmx mk_angndx [\fB\-s\fP \fI[<.tpr>]\fP] [\fB\-n\fP \fI[<.ndx>]\fP] [\fB\-type\fP \fI<enum>\fP] [\fB\-[no]hyd\fP]
             [\fB\-hq\fP \fI<real>\fP]
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.fi
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.SH DESCRIPTION
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\fBgmx mk_angndx\fP makes an index file for calculation of
angle distributions etc. It uses a run input file (.tpx) for the
definitions of the angles, dihedrals etc.
.SH OPTIONS
.sp
Options to specify input files:
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.TP
.B \fB\-s\fP [<.tpr>] (topol.tpr)
Portable xdr run input file
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.sp
Options to specify output files:
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.TP
.B \fB\-n\fP [<.ndx>] (angle.ndx)
Index file
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Other options:
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.TP
.B \fB\-type\fP <enum> (angle)
Type of angle: angle, dihedral, improper, ryckaert\-bellemans
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.B \fB\-[no]hyd\fP  (yes)
Include angles with atoms with mass < 1.5
.TP
.B \fB\-hq\fP <real> (\-1)
Ignore angles with atoms with mass < 1.5 and magnitude of their charge less than this value
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.SH SEE ALSO
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\fBgmx(1)\fP
.sp
More information about GROMACS is available at <\fI\%http://www.gromacs.org/\fP>.
.SH COPYRIGHT
2019, GROMACS development team
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