table of contents
other versions
- buster 1.5.10+ds-3
- buster-backports 1.6.1+ds-3~bpo10+1
- testing 1.6.1+ds-3
- unstable 1.6.1+ds-3
- experimental 1.6.2+ds-1
GT-TALLYMER-SEARCH(1) | GenomeTools Manual | GT-TALLYMER-SEARCH(1) |
NAME¶
gt-tallymer-search - Search a set of k-mers in an index constructed by ``gt tallymer mkindex''.SYNOPSIS¶
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]DESCRIPTION¶
-tyr [string]specify tallymer-index (default: undefined)
-q
specify query file names
-strand [string]
specify the strand to be searched: use f (for forward
strand) or p (for reverse complemented strand) or fp (for both); default is f
(default: f)
-output
specify output flags (qseqnum, qpos, counts,
sequence)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS¶
Report bugs to <kurtz@zbh.uni-hamburg.de>.10/28/2018 | GenomeTools 1.5.10 |