.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.7.
.TH FASTX_TRIMMER "1" "September 2018" "fastx_trimmer 0.0.14" "User Commands"
.SH NAME
fastx_trimmer \- FASTA/Q Trimmer
.SH DESCRIPTION
usage: fastx_trimmer [\-h] [\-f N] [\-l N] [\-t N] [\-m MINLEN] [\-z] [\-v] [\-i INFILE] [\-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
.TP
[\-h]
= This helpful help screen.
.TP
[\-f N]
= First base to keep. Default is 1 (=first base).
.TP
[\-l N]
= Last base to keep. Default is entire read.
.TP
[\-t N]
= Trim N nucleotides from the end of the read.
.TP
\&'\-t'
can not be used with '\-l' and '\-f'.
.TP
[\-m MINLEN]
= With [\-t], discard reads shorter than MINLEN.
.TP
[\-z]
= Compress output with GZIP.
.TP
[\-i INFILE]
= FASTA/Q input file. default is STDIN.
.IP
[\-o OUTFILE] = FASTA/Q output file. default is STDOUT.
.SH SEE ALSO
The quality of this automatically generated manpage might be
insufficient.  It is suggested to visit
.IP
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
.P
to get a better layout as well as an overview about connected
FASTX tools.