.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.7.
.TH FASTQ_TO_FASTA "1" "September 2018" "fastq_to_fasta 0.0.14" "User Commands"
.SH NAME
fastq_to_fasta \- Convert FASTQ files to FASTA files
.SH DESCRIPTION
usage: fastq_to_fasta [\-h] [\-r] [\-n] [\-v] [\-z] [\-i INFILE] [\-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
.TP
[\-h]
= This helpful help screen.
.TP
[\-r]
= Rename sequence identifiers to numbers.
.TP
[\-n]
= keep sequences with unknown (N) nucleotides.
.IP
Default is to discard such sequences.
.TP
[\-v]
= Verbose \- report number of sequences.
.TP
If [\-o] is specified,
report will be printed to STDOUT.
.IP
If [\-o] is not specified (and output goes to STDOUT),
report will be printed to STDERR.
.TP
[\-z]
= Compress output with GZIP.
.TP
[\-i INFILE]
= FASTA/Q input file. default is STDIN.
.IP
[\-o OUTFILE] = FASTA output file. default is STDOUT.
.SH SEE ALSO
The quality of this automatically generated manpage might be
insufficient.  It is suggested to visit
.IP
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
.P
to get a better layout as well as an overview about connected
FASTX tools.