.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.7.
.TH FASTQ_QUALITY_FILTER "1" "September 2018" "fastq_quality_filter 0.0.14" "User Commands"
.SH NAME
fastq_quality_filter \- Filters sequences based on quality
.SH DESCRIPTION
usage: fastq_quality_filter [\-h] [\-v] [\-q N] [\-p N] [\-z] [\-i INFILE] [\-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
.TP
[\-h]
= This helpful help screen.
.TP
[\-q N]
= Minimum quality score to keep.
.TP
[\-p N]
= Minimum percent of bases that must have [\-q] quality.
.TP
[\-z]
= Compress output with GZIP.
.TP
[\-i INFILE]
= FASTA/Q input file. default is STDIN.
.IP
[\-o OUTFILE] = FASTA/Q output file. default is STDOUT.
[\-v]         = Verbose \- report number of sequences.
.TP
If [\-o] is specified,
report will be printed to STDOUT.
.IP
If [\-o] is not specified (and output goes to STDOUT),
report will be printed to STDERR.
.TP
[\-Q N]
= FASTQ ASCII offset. Default is 33.
.SH SEE ALSO
The quality of this automatically generated manpage might be
insufficient.  It is suggested to visit
.IP
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
.P
to get a better layout as well as an overview about connected
FASTX tools.