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- buster 0.0.14-6
FASTQ_MASKER(1) | User Commands | FASTQ_MASKER(1) |
NAME¶
fastq_masker - Masks nucleotides with 'N' (or other character) based on qualityDESCRIPTION¶
usage: fastq_masker [-h] [-v] [-q N] [-r C] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)- [-h]
- = This helpful help screen.
- [-q N]
- = Quality threshold - nucleotides with lower quality will be masked
- Default is 10.
- [-r C]
- = Replace low-quality nucleotides with character C. Default is 'N'
- [-z]
- = Compress output with GZIP.
- [-i INFILE]
- = FASTQ input file. default is STDIN.
- [-o OUTFILE] = FASTQ output file. default is STDOUT. [-v] = Verbose - report number of sequences.
- If [-o] is specified,
- report will be printed to STDOUT.
- If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
- [-Q N]
- = FASTQ ASCII offset. Default is 33.
SEE ALSO¶
The quality of this automatically generated manpage might be insufficient. It is suggested to visitto get a better layout as well as an overview about connected FASTX tools.
September 2018 | fastq_masker 0.0.14 |