NAME¶
fastaq_to_random_subset - Make a random sample of sequences (and optionally
mates as well)
DESCRIPTION¶
usage: fastaq_to_random_subset [options] <infile> <outfile>
<percent>
Takes a random subset of reads from a sequence file and optionally
the corresponding read from a mates file. Output is interleaved if mates
file given
positional arguments:¶
- infile
- Name of input file
- outfile
- Name of output file
- FLOAT
- Per cent probability of keeping any given read (pair) in [0,100]
optional arguments:¶
- -h, --help
- show this help message and exit
- --mate_file MATE_FILE
- Name of mates file
- --seed INT
- Seed for random number generator. If not given, python's default is
used
