table of contents
| FASTAQ-SCAFFOLDS_TO_CONTIGS(1) | User Commands | FASTAQ-SCAFFOLDS_TO_CONTIGS(1) |
NAME¶
fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffoldsDESCRIPTION¶
usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input
positional arguments:¶
- infile
- Name of input file
- outfile
- Name of output contigs file
optional arguments:¶
- -h, --help
- show this help message and exit
- --number_contigs
- Use this to enumerate contig names 1,2,3,... within each scaffold
| July 2018 | fastaq 3.17.0 |