.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH FASTAQ-GET_SEQ_FLANKING_GAPS "1" "July 2018" "fastaq 3.17.0" "User Commands"
.SH NAME
fastaq_get_seq_flanking_gaps \- Gets the sequences flanking gaps
.SH DESCRIPTION
usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>
.PP
Gets the sequences flanking gaps
.SS "positional arguments:"
.TP
infile
Name of input file
.TP
outfile
Name of output file
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-left\fR INT
Number of bases to get to left of gap [25]
.TP
\fB\-\-right\fR INT
Number of bases to get to right of gap [25]