NEWCPGREPORT(1e) | EMBOSS Manual for Debian | NEWCPGREPORT(1e) |
NAME¶
newcpgreport - Identify CpG islands in nucleotide sequence(s)SYNOPSIS¶
newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float -minpc float -outfile outfile
newcpgreport -help
DESCRIPTION¶
newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-window integerDefault value: 100
-shift integer
Default value: 1
-minlen integer
Default value: 200
-minoe float
Default value: 0.6
-minpc float
Default value: 50.
Output section¶
-outfile outfileBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
newcpgreport is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |