MEGAMERGER(1e) | EMBOSS Manual for Debian | MEGAMERGER(1e) |
NAME¶
megamerger - Merge two large overlapping DNA sequencesSYNOPSIS¶
megamerger -asequence sequence -bsequence sequence -wordsize integer [-prefer boolean] -outseq seqout -outfile outfile
megamerger -help
DESCRIPTION¶
megamerger is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Consensus" command group(s).OPTIONS¶
Input section¶
-asequence sequence-bsequence sequence
Required section¶
-wordsize integerDefault value: 20
Additional section¶
-prefer booleanWhen a mismatch between the two sequence is discovered,
one or other of the two sequences must be used to create the merged sequence
over this mismatch region. The default action is to create the merged sequence
using the sequence where the mismatch is closest to that sequence's centre. If
this option is used, then the first sequence (seqa) will always be used in
preference to the other sequence when there is a mismatch. Default value:
N
Output section¶
-outseq seqout-outfile outfile
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
megamerger is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |