NAME¶
fastq-clipper - ea-utils: removes one or more adapter sequences from the fastq
file
DESCRIPTION¶
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter
sequences are colon-delimited. Stats go to stderr, unless -o is
specified.
OPTIONS¶
- -h
- This help
- -o FIL
- Output file (stats to stdout)
- -p N
- Maximum difference percentage (10)
- -m N
- Minimum clip length (1)
- -l N
- Minimum remaining sequence length (15)
- -x [N]
- Extra match length past adapter length,
- N =-1 : search all N = 0 : search only up to adapter length
- -e
- End-of-line (default)
- -b
- Beginning-of-line (not supported yet)
