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| E-MEM(1) |
User Commands |
E-MEM(1) |
NAME¶
e-mem - finds position and length of all Maximal Exact Matches (MEMs) for very
large genomes
SYNOPSIS¶
e-mem [options] <reference-file> <query-file>
DESCRIPTION¶
e-mem finds and outputs the position and length of all maximal exact matches
(MEMs) between <query-file> and <reference-file>
OPTIONS¶
- -n
- match only the characters a, c, g, or t they can be in upper or in lower
case
- -l
- set the minimum length of a match. The default length is 50
- -b
- compute forward and reverse complement matches
- -r
- only compute reverse complement matches
- -c
- report the query-position of a reverse complement match relative to the
original query sequence
- -F
- force 4 column output format regardless of the number of reference
sequence input
- -L
- show the length of the query sequences on the header line
- -d
- set the split size. The default value is 1
- -t
- number of threads. The default is 1 thread
- -h
- show possible options
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.
