sand_compress_reads - compress sequence data
sand_compress_reads [-qcivh] [infile] [outfile]
sand_compress_reads reads sequence data in standard FASTA format, and
produces output in the compressed FASTA (cfa) format used by the
sand_filter_master(1) and sand_align_master(1).
If the output file is omitted, standard output is used. if the
input file is omitted, standard input is used. After completing the
compression, this program will output a summary line of sequences and bytes
- Quiet mode: suppress summary line.
- Remove Celera read ids if data came from the Celera gatekeeper.
- Remove Celera read ids but leave internal ids if the data came from the
- Display version information.
- Show help text.
On success, returns zero. On failure, returns non-zero.
To compress mydata.fasta into mydata.cfa:
% sand_compress_reads mydata.fasta mydata.cfa
The Cooperative Computing Tools are Copyright (C) 2003-2004 Douglas Thain and
Copyright (C) 2005-2015 The University of Notre Dame. This software is
distributed under the GNU General Public License. See the file COPYING for