NAME¶

SYNOPSIS¶

DESCRIPTION¶

OPTIONS¶

-h, --host www.crystallography.net

-s, --server www.crystallography.net Query COD database on the host 'www.crystallography.net'.

-l, --localhost Use database server on the localhost to query the COD database.

-p, --port 3306 Use use the specified port (default 3306) to query structures.

-t, --table data Use SQL table 'data' to query for structures.

-u, --user cod_reader Use user name 'cod_reader' to access COD database; this reader should be granted SELECT privilege, i.e. should be able to read the COD database, without supplying a password.

--password Use the specified password (default empty) to connect.

--platform 'SQLite' Use the SQL database platform 'SQLite' to query structures (default 'mysql').

--cif input1.cif Specify a CIF file to be deposited. Multiple CIF files can be provided in a way like this: cod_predeposition_check --cif input1.cif --cif input2.cif

--hkl, --fobs input1.hkl Specify a Fobs file to be deposited. Multiple Fobs files can be provided in way like this: cod_predeposition_check --hkl input1.hkl --hkl input2.hkl The order of the files is important in order to pair CIF and Fobs files correctly.

--type, --deposition-type 'prepublication' Specify the deposition type under which the structure is to be deposited (default 'published').

--author-name 'Doe, J.' Use the specified name as the name of the person depositing the files.

--journal 'The Journal' Use the specified journal name as if it was supplied by the depositor during the 'prepublication' type deposition.

--hold-period 3 Use the specified hold period as if it was supplied by the depositor.

--replace Treat given files as replacements for previously deposited data.

--no-replace, --dont-replace Do not treat given files as replacements for previously deposited data (default).

--release Treat given files as if they were previously deposited as prepublication material and should now be released into the public domain.

--no-release, --dont-release Do not treat given files as if they were previously deposited as prepublication material and should now be released into the public domain (default).

--bypass-checks Do not check CIF files for compliance with COD requirements.

--dont-bypass-checks, --no-bypass-checks Check CIF files for compliance with COD requirements (default).

--split-pdcif Output powder diffraction data blocks as a HKL file.

--dont-split-pdcif, --no-split-pdcif Output powder diffraction data blocks as part of the CIF file (default).

--print-timestamps Print timestamps to STDOUT at the start and end of each CIF file deposition.

--no-print-timestamps, --dont-print-timestamps Do not print timestamps to STDOUT at the start and end of each CIF file deposition (default)

--tmp-dir, --temp-dir Use the specified temporary directory (default './').

--use-perl-parser Use Perl parser to parse CIF files.

--use-c-parser Use C parser to parse CIF files (default).

--help, --usage Output a short usage message (this message) and exit.

--version Output version information and exit.

REPORTING BUGS¶