.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.10.
.TH CNVKIT_IMPORT-PICARD "1" "March 2019" "cnvkit_import-picard 0.9.5" "User Commands"
.SH NAME
cnvkit_import-picard \- Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.

    The input file is generated by the PER_TARGET_COVERAGE option in the
    CalculateHsMetrics script in Picard tools.

    If 'antitarget' is in the input filename, the generated output filename will
    have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.
    
.SH DESCRIPTION
usage: cnvkit import\-picard [\-h] [\-d DIRECTORY] targets [targets ...]
.SS "positional arguments:"
.TP
targets
Sample coverage .csv files (target and antitarget).
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-d\fR DIRECTORY, \fB\-\-output\-dir\fR DIRECTORY
Output directory name.