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| CNVKIT_ACCESS(1) |
User Commands |
CNVKIT_ACCESS(1) |
NAME¶
cnvkit_access - List the locations of accessible sequence regions in a FASTA
file.
DESCRIPTION¶
usage: cnvkit access [-h] [-s MIN_GAP_SIZE] [-x EXCLUDE] [-o FILENAME]
- fa_fname
positional arguments:¶
- fa_fname
- Genome FASTA file name
optional arguments:¶
- -h, --help
- show this help message and exit
- -s MIN_GAP_SIZE, --min-gap-size MIN_GAP_SIZE
- Minimum gap size between accessible sequence regions. Regions separated by
less than this distance will be joined together. [Default: 5000]
- -x EXCLUDE, --exclude EXCLUDE
- Additional regions to exclude, in BED format. Can be used multiple
times.
- -o FILENAME, --output FILENAME
- Output file name
