.TH sequence "1" "Jan 25 2019" "CMTK 3.3.1p1" "The Computational Morphometry Toolkit"
.SH NAME
sequence \- Value sequence
.SH DESCRIPTION
Analyze sequence of numerical values, which is read from standard input
.SH OPTIONS
.SS Global Toolkit Options (these are shared by all CMTK tools)
.TP 5
\fB\-\-help\fR
Write list of basic command line options to standard output.
.TP 5
\fB\-\-help-all\fR
Write complete list of basic and advanced command line options to standard output.
.TP 5
\fB\-\-wiki\fR
Write list of command line options to standard output in MediaWiki markup.
.TP 5
\fB\-\-man\fR
Write man page source in 'nroff' markup to standard output.
.TP 5
\fB\-\-version\fR
Write toolkit version to standard output.
.TP 5
\fB\-\-echo\fR
Write the current command line to standard output.
.TP 5
\fB\-\-verbose-level\fR \fI<integer>\fR
Set verbosity level.
.TP 5
\fB\-\-verbose\fR, \fB\-v\fR
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
.TP 5
\fB\-\-threads\fR \fI<integer>\fR
Set maximum number of parallel threads (for POSIX threads and OpenMP).
.SS Main Options
.TP 5
\fB\-\-thresh\fR \fI<double>\fR, \fB\-t\fR \fI<double>\fR
Maximum value threshold. All values above are ignored.
.B [Default: disabled]
.TP 5
\fB\-\-abs\fR, \fB\-a\fR
Use absolute values.
.SS Histogram Options
.TP 5
\fB\-\-histogram-min\fR \fI<double>\fR
Minimum of the histogram value range. All values below this will be counted in the first histogram bin.
.B [Default: disabled]
.TP 5
\fB\-\-histogram-max\fR \fI<double>\fR
Maximum of the histogram value range. All values above this will be counted in the last histogram bin.
.B [Default: disabled]
.TP 5
\fB\-\-histogram-bins\fR \fI<integer>\fR
Number of histogram bins.
.B [Default: 1000]
.SS Output Options
.TP 5
\fB\-\-format\fR \fI<string>\fR, \fB\-f\fR \fI<string>\fR
Output number format in printf() style.
.B [Default: "%.6f"]
.TP 5
\fB\-\-write-histogram\fR \fI<string>\fR
Path for optional histogram output in comma-separated (CSV) format.
.B [Default: NONE]
.SH AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
.SH LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
.SH BUGS
Report bugs at http://nitrc.org/projects/cmtk/
.SH ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.