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.IX Title "GMOD_ADD_ORGANISM 1p"
.TH GMOD_ADD_ORGANISM 1p "2018-09-27" "perl v5.26.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "NAME"
$0 \- Adds an entry to the organism table
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 1
\&  % gmod_add_organism.pl [options]
.Ve
.SH "COMMAND-LINE OPTIONS"
.IX Header "COMMAND-LINE OPTIONS"
.Vb 7
\& \-\-name_only      Check just for a name, and return a 1 if present
\& \-\-common_name
\& \-\-genus
\& \-\-species
\& \-\-abbreviation
\& \-\-comment
\& \-\-dbprofile      Specify a gmod.conf profile name (otherwise use default)
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This script will insert an entry into the Chado organism table.  The 
combination genus and species is required to be unique.  If either of
those items are not provided, or if that combination is already in the database,
the script will exit without doing anything.  Technically, those are the only
two things required, but it is strongly suggested that you provide a 
common_name and abbreviation.
.PP
The \-\-name_only option is intended for use primarily at install time,
to check the database for the existence of an entry in the organism
table with a given common_name.  If it is present, it prints \*(L"1\*(R" and
exits, otherwise it prints \*(L"0\*(R" and exits.  The options \-\-common_name
must be used in conjunction with \-\-name_only.
.SH "AUTHOR"
.IX Header "AUTHOR"
Scott Cain <scain@cpan.org>
.PP
Copyright (c) 2011
.PP
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.