Scroll to navigation

REMOVE_SHORT_SEQS(1) User Commands REMOVE_SHORT_SEQS(1)

NAME

remove_short_seqs - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

usage: remove_short_seqs [[-i input] [-l length] | [-h]] -i DIRECTORY the input directory of GenBank files with .gbk extensions -l INTEGER remove GenBank files that describe sequences shorter than this length

USAGE:

remove_short_seqs -i DIR -l INTEGER

DESCRIPTION:

Removes GenBank files that are shorter than the specified length from the provided directory.

REQUIRED ARGUMENTS:

-i, --input DIR

Input directory of GenBank files with .gbk extensions.

-l, --length INTEGER

Remove GenBank files that describe sequences shorter than this length.

OPTIONAL ARGUMENTS:

-h, --help

Show this message

EXAMPLE:

remove_short_seqs -i my_project/comparison_genomes -l 100000

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
August 2018 remove_short_seqs 20170919