.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH FETCH_REFSEQ_BACTERIAL_GENOMES_BY_NAME "1" "August 2018" "fetch_refseq_bacterial_genomes_by_name 20170919" "User Commands"
.SH NAME
fetch_refseq_bacterial_genomes_by_name \- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
.SH DESCRIPTION
.SS "USAGE:"
.IP
fetch_refseq_bacterial_genomes_by_name \fB\-n\fR STRING \fB\-o\fR DIR
.SS "DESCRIPTION:"
.IP
Downloads a GenBank record using a partial or complete bacterial species name.
The \fB\-\-min\fR and \fB\-\-max\fR options can be used to restrict the size of the
returned sequences.
.SS "REQUIRED ARGUMENTS:"
.HP
\fB\-n\fR, \fB\-\-name\fR STRING
.IP
Complete or partial name of the bacterial species.
.HP
\fB\-m\fR, \fB\-\-min\fR INTEGER
.IP
Records with a sequence length shorter than this value will be ignored.
.HP
\fB\-x\fR, \fB\-\-max\fR INTEGER
.IP
Records with a sequence length longer than this value will be ignored.
.HP
\fB\-o\fR, \fB\-\-output\fR DIR
.IP
The output directory to download the GenBank file into.
.SS "OPTIONAL ARGUMENTS:"
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
Show this message.
.SS "EXAMPLE:"
.IP
fetch_refseq_bacterial_genomes_by_name \fB\-n\fR 'Escherichia*' \fB\-o\fR my_project/comparison_genomes
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.